Ares Lab home page

Other Alt Splicing databases

• FAST-DB
• MAASE
• SpliceMiner

local pages , password required on all pages below:

• Omniviewer

• Primary local genome browser with Gene models and probes

• Local GOMiner

• Uber goer

• Sequence extracter

• local RNAfold

• Track Editor ( customizable 'track' editor )

• DataFisher (not sure where your event might be significant )

Data Depositories

• MDB v1

• MDB Depository v2

Gene model builder

Viewer CGI scripts

Analysis database template

• Notation
  • BlahViewer = sorted output
  • BlahDumper = unsorted, unfiltered, intended for export
  • UberBlah = have a favorite analysis want to compare it to others
  • SpanBlah = define overlapping events as sharing a span

• TableSummary (analysis category summary )

• AresLab DataViewer (v2) (one analysis viewer)

• VennViewer (multiple analysis viewer , generates classes of results )

• UberViewer (multiple analysis viewer, uber event defined by overlap)

• SpanViewer (multiple analysis viewer, uber event defined by shared span)

• SpanDumper (multiple analysis data dump )

• UberDumper (multiple analysis data dump)

Post-Analysis Viewers

• UberViewer -> GOMiner (GO analysis)

• Local GOMiner (GO analysis)

• UberViewer -> Conserved Sequence Extractor

Gene Models and Annotations

• 2006 Annotation Reports

• Migration and local_exonwalk UCSC Browser Style Viewer

Sequence Analysis

• Get Exon Sequence : to obtain sequence for further analysis.

• Conserved Sequence Extractor : to obtain conserved sequence for further analysis

• Listen